From a recent New York Times: 

In 1988, the surgeon general, C. Everett Koop, proclaimed ice cream to a be public-health menace right up there with cigarettes. … He introduced his report with these words: "The depth of the science base underlying its findings is even more impressive than that for tobacco and health in 1964."

That was a ludicrous statement, as Gary Taubes demonstrates in his new book meticulously debunking diet myths, "Good Calories, Bad Calories" (Knopf, 2007). The notion that fatty foods shorten your life began as a hypothesis based on dubious assumptions and data; when scientists tried to confirm it they failed repeatedly. The evidence against Häagen-Dazs was nothing like the evidence against Marlboros. …

With skeptical scientists ostracized, the public debate and research agenda became dominated by the fat-is-bad school. Later the National Institutes of Health would hold a "consensus conference" that concluded there was "no doubt" that low-fat diets "will afford significant protection against coronary heart disease" for every American over the age of 2. The American Cancer Society and the surgeon general recommended a low-fat diet to prevent cancer. 

But when the theories were tested in clinical trials, the evidence kept turning up negative. As Mr. Taubes notes, the most rigorous meta-analysis of the clinical trials of low-fat diets, published in 2001 by the Cochrane Collaboration, concluded that they had no significant effect on mortality.

Hat tip to Jef Allbright.